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Creators/Authors contains: "Brooks, Paul"

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  1. Throughout communities and ecosystems both within and downstream of mountain forests, there is an increasing risk of wildfire. After a wildfire, stakeholder management will vary depending on the rate and spatial heterogeneity of forest re-establishment. However, forest re-establishment and recovery after a wildfire is closely linked to interactions between the temporal evolution of plant-available water (PAW) and spatial patterns in available energy. Therefore, we propose a conceptual model that describes spatial heterogeneity in long-term watershed recovery rate as a function of topographically-mediated interactions between available energy and the movement of water in the subsurface (i.e. subsurface hydrologic redistribution). As vegetation becomes re-established across a burned landscape in response to topographic and subsurface controls on water and energy, canopies shade the ground surface and reduce wind speed creating positive feedbacks that increase PAW. Furthermore, slope aspect differentially impacts the spatial patterns in regrowth and re-establishment. South aspect slopes receive high solar radiation, and consequently are warmer and drier, with lower standing biomass and greater drought stress and mortality compared to north aspect slopes. To date, most assessments of these impacts have taken a bulk approach, or an implicitly one-dimensional conceptual approach that does not include spatial heterogeneity in hydroclimate influenced by topography and vegetation. The presented conceptual model sets a starting point to further our understanding of the spatio-temporal evolution of PAW storage, energy availability, and vegetation re-establishment and survival in forested catchments after a wildfire. The model also provides a template for collaboration with diverse stakeholders to aid the co-production of next generation management tools to mitigate the negative impacts of future wildfires. 
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  2. Abstract In most complex nervous systems there is a clear anatomical separation between the nerve cord, which contains most of the final motor outputs necessary for behaviour, and the brain. In insects, the neck connective is both a physical and information bottleneck connecting the brain and the ventral nerve cord (VNC, spinal cord analogue) and comprises diverse populations of descending (DN), ascending (AN) and sensory ascending neurons, which are crucial for sensorimotor signalling and control. Integrating three separate EM datasets, we now provide a complete connectomic description of the ascending and descending neurons of the female nervous system ofDrosophilaand compare them with neurons of the male nerve cord. Proofread neuronal reconstructions have been matched across hemispheres, datasets and sexes. Crucially, we have also matched 51% of DN cell types to light level data defining specific driver lines as well as classifying all ascending populations. We use these results to reveal the general architecture, tracts, neuropil innervation and connectivity of neck connective neurons. We observe connected chains of descending and ascending neurons spanning the neck, which may subserve motor sequences. We provide a complete description of sexually dimorphic DN and AN populations, with detailed analysis of circuits implicated in sex-related behaviours, including female ovipositor extrusion (DNp13), male courtship (DNa12/aSP22) and song production (AN hemilineage 08B). Our work represents the first EM-level circuit analyses spanning the entire central nervous system of an adult animal. 
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  3. Abstract Forest mortality has been widely observed across the globe during recent episodes of drought and extreme heat events. But the future of forest mortality remains poorly understood. While the direct effects of future climate and elevated CO 2 on forest mortality risk have been studied, the role of lateral subsurface water flow has rarely been considered. Here we demonstrated the fingerprint of lateral flow on the forest mortality risk of a riparian ecosystem using a coupled plant hydraulics-hydrology model prescribed with multiple Earth System Model projections of future hydroclimate. We showed that the anticipated water-saving and drought ameliorating effects of elevated CO 2 on mortality risk were largely compromised when lateral hydrological processes were considered. Further, we found lateral flow reduce ecosystem sensitivity to climate variations, by removing soil water excess during wet periods and providing additional water from groundwater storage during dry periods. These findings challenge the prevailing expectation of elevated CO 2 to reduce mortality risk and highlight the need to assess the effects of lateral flow exchange more explicitly moving forward with forest mortality projections. 
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  4. Abstract The fruit flyDrosophila melanogastercombines surprisingly sophisticated behaviour with a highly tractable nervous system. A large part of the fly’s success as a model organism in modern neuroscience stems from the concentration of collaboratively generated molecular genetic and digital resources. As presented in our FlyWire companion paper1, this now includes the first full brain connectome of an adult animal. Here we report the systematic and hierarchical annotation of this ∼130,000-neuron connectome including neuronal classes, cell types and developmental units (hemilineages). This enables any researcher to navigate this huge dataset and find systems and neurons of interest, linked to the literature through the Virtual Fly Brain database2. Crucially, this resource includes 4,552 cell types. 3,094 are rigorous consensus validations of cell types previously proposed in the “hemibrain” connectome3. In addition, we propose 1,458 new cell types, arising mostly from the fact that the FlyWire connectome spans the whole brain, whereas the hemibrain derives from a subvolume. Comparison of FlyWire and the hemibrain showed that cell type counts and strong connections were largely stable, but connection weights were surprisingly variable within and across animals. Further analysis defined simple heuristics for connectome interpretation: connections stronger than 10 unitary synapses or providing >1% of the input to a target cell are highly conserved. Some cell types showed increased variability across connectomes: the most common cell type in the mushroom body, required for learning and memory, is almost twice as numerous in FlyWire as the hemibrain. We find evidence for functional homeostasis through adjustments of the absolute amount of excitatory input while maintaining the excitation-inhibition ratio. Finally, and surprisingly, about one third of the cell types proposed in the hemibrain connectome could not yet be reliably identified in the FlyWire connectome. We therefore suggest that cell types should be defined to be robust to inter-individual variation, namely as groups of cells that are quantitatively more similar to cells in a different brain than to any other cell in the same brain. Joint analysis of the FlyWire and hemibrain connectomes demonstrates the viability and utility of this new definition. Our work defines a consensus cell type atlas for the fly brain and provides both an intellectual framework and open source toolchain for brain-scale comparative connectomics. 
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  5. Abstract Quantifying the routing of snowmelt to surface water is critical for predicting the impacts of atmospheric deposition and changing land use on water quality in montane catchments. To investigate solute sources and streamflow in the montane Provo River watershed (Utah, USA), we used time‐series87Sr/86Sr ratios sampled at three sites (Soapstone, Woodland and Hailstone) across a gradient of bedrock types. Soils are influenced by aeolian dust contributions, with distinct87Sr/86Sr ratios relative to siliciclastic bedrock, providing an opportunity to investigate shallow versus deeper flow paths for controlling water chemistry. At the most upstream site (Soapstone), Sr concentrations averaged ~17 μg/L with minimal dilution during snowmelt suggesting subsurface flow paths dominated streamflow. However, a decrease in87Sr/86Sr ratios from ~0.717 during baseflow to as low as ~0.713 during snowmelt indicated the activation of shallow flow paths through dust‐derived soils. In contrast, downstream sites receiving water inputs from Sr‐rich carbonate bedrock (Woodland and Hailstone) exhibited strong dilution of Sr from ~120 to 20 μg/L and an increase in87Sr/86Sr ratios from ~0.7095 to ~0.712 during snowmelt. A three‐component mixing model using87Sr/86Sr ratios and Sr concentrations at Soapstone showed water inputs were dominated by direct snowmelt and flushed soil water during runoff and groundwater during baseflow. At Woodland and Hailstone, a two‐component mixing model showed that the river was a mixture of groundwater and up to 75% upstream channel water during snowmelt. Our findings highlight the importance of flushed soil water for controlling stream water discharge and chemistry during snowmelt, with the signal from the upstream site propagating downstream in a nested catchment. Further, aeolian dust contributes to the solute chemistry of montane streams with potential impacts on water quality along shallow flow paths. Potential contaminants in these surface soils (e.g., Pb deposition in dust) may have significant impacts on water quality during snowmelt runoff. 
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  6. Abstract Warming temperatures and precipitation changes are expected to alter water availability and increase drought stress in western North America, yet uncertainties remain in how concurrent changes in the amount and seasonality of precipitation interact with warming to affect hydrologic partitioning. We combined over a century of streamflow (Q) and climate observations with two decades of tree growth data and remotely sensed vegetation activity to quantify how temperature and precipitation interact to control hydrologic partitioning in the Front Range of Colorado, Boulder Creek Watershed. Temperature and precipitation significantly increased over the last five decades, with precipitation increasing primarily in winter (11.2 mm decade−1) and temperature increasing primarily during the growing season (0.12°C decade−1). In response to wetter winters and warmer summers, streamflow decreased −9.8 mm decade−1, with largest declines occurring during summer and autumn baseflow (−8.4 mm decade−1). Spring warming was associated with increases in episodic, short spring melt events, earlier and slower snowmelt and an increase in fraction of precipitation available to plants (catchment wetting or W). Warming during the growing season resulted in an increase in the fraction of W lost as evapotranspiration (ET), earlier and lower peaks in remotely sensed normalized difference vegetation index (NDVI) and lower tree ring width index (RWI). These analyses highlight that vegetation is becoming increasingly water limited even as increases in precipitation and slower melt increase plant water availability. Further, catchment‐derived metrics like the Horton Index (ET/W) provide insight in to how simultaneous changes in temperature, precipitation and melt impact vegetation across complex watersheds. 
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  7. Abstract The 2085 km2Jordan River Basin, and its seven sub‐catchments draining the Central Wasatch Range immediately east of Salt Lake City, UT, are home to an array of hydrologic, atmospheric, climatic and chemical research infrastructure that collectively forms the Wasatch Environmental Observatory (WEO). WEO is geographically nested within a wildland to urban land‐use gradient and built upon a strong foundation of over a century of discharge and climate records. A 2200 m gradient in elevation results in variable precipitation, temperature and vegetation patterns. Soil and subsurface structure reflect systematic variation in geology from granitic, intrusive to mixed sedimentary clastic across headwater catchments, all draining to the alluvial or colluvial sediments of the former Lake Bonneville. Winter snowfall and spring snowmelt control annual hydroclimate, rapid population growth dominates geographic change in lower elevations and urban gas and particle emissions contribute to episodes of severe air pollution in this closed‐basin. Long‐term hydroclimate observations across this diverse landscape provide the foundation for an expanding network of infrastructure in both montane and urban landscapes. Current infrastructure supports both basic and applied research in atmospheric chemistry, biogeochemistry, climate, ecology, hydrology, meteorology, resource management and urban redesign that is augmented through strong partnerships with cooperating agencies. These features allow WEO to serve as a unique natural laboratory for addressing research questions facing seasonally snow‐covered, semi‐arid regions in a rapidly changing world and an excellent facility for providing student education and research training. 
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